SeqSeg, Now a Pip Installable Package

A tutorial on setting up SeqSeg for medical image segmentation

1. Pip Installation

SeqSeg is now available as a pip installable package! This makes it easier to install and use in your projects. To install SeqSeg, simply run the following command in your terminal:

pip install seqseg

This will install the latest version of SeqSeg along with all its dependencies.

2. Tutorial

To get started with SeqSeg, you can follow the tutorial provided in the SeqSeg GitHub repository. The tutorial has data and code examples to help you understand how to use SeqSeg for medical image segmentation tasks. The data is the same as SimVascular. Main steps in the tutorial include:

1. Seed Point Definition: Define seed points in the images where you want to start the segmentation.
2. Weight Downloading: Download the pre-trained weights for the model.
3. Segmentation: Run the segmentation algorithm on your images using the defined seed points and downloaded weights.
4. Visualization: Visualize the segmentation results to assess the performance of the model.